PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT24643
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 1068aa    MW: 119209 Da    PI: 6.0858
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT24643genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.2e-09662710348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E ++lvd+v+q+G+g W+ I r        Rt  ++k++w+++l
         EMT24643 662 AWTLSEVLKLVDGVAQFGPGKWSEIRRLSFasySYRTSVDLKDKWRNLL 710
                      7**************************99999*99************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.283655714IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-12656713IPR009057Homeodomain-like
SuperFamilySSF466891.22E-14657716IPR009057Homeodomain-like
SMARTSM007173.2E-9659712IPR001005SANT/Myb domain
CDDcd116602.01E-17661711No hitNo description
PfamPF002495.8E-6662710IPR001005SANT/Myb domain
PfamPF170351.0E-510121047IPR027353NET domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1068 aa     Download sequence    Send to blast
MVSHHRSRSL RRHASLLHPS FRRALREGTA GLRNPASRDP VRERGDQVFG EHTRTTAGSD  60
DFTDDDFFPD LGNLFLNNMG DNLNANGAAS VAPYVFLSFL FEIVQHGVNK PTDSDSSEST  120
AAATFRNPGR IDSHKFLAQT KRPKDPRYKV DTLQGAQETK NGENDFEENG SLDPVVYQLV  180
RVEGDGTLVP PTEDEVLQIE QFLDDKVDLP SIDDVGNVED FFTNDCMLLK EPDFEEGYSE  240
LETNGEIHTQ QFDADLEVDR LKPSDDSLDI PSKCTVVHDH KPDKLNTEQG DNNIVHQDNA  300
STETPKSTVL NDSCSAEKEK ADACSRSVNN SSTGPSVSGV TSSVPDFSIL RGEVCLDNLT  360
IRELQEAFRA TFGRETTVKD KLWLKRRITM GLTNSCDVQS SGCVVKDYKI VCKDAKHKLP  420
TIEGLPKVEV EATSLVRFQV LGSGNERDTS SCSYYRSEDQ QRSSNRLKGV STDNDESEGT  480
LQDEQGAAKR LRKPTKRYIE ELADTETLDS TGKLSSPGKR AAHGEVLLRQ RVTPLQEVDS  540
LSITYPTRKD TFGGFSVHVP YASRMRRGRP RRNFISFLDD DPPVECPEVQ MAVETMLGKD  600
GEHVNHKNAE KKGGHIETAE KKGGHIETAD NKEIRSIEAD DICRTDAKTK TKRGLKRKHH  660
RAWTLSEVLK LVDGVAQFGP GKWSEIRRLS FASYSYRTSV DLKDKWRNLL RASQTQLSPE  720
NDGVCPRKSN PSIIPIPPAI LLRVKELAEL QPQAGNLAAA IKFSGQSSKV AQGRACICVQ  780
YVHRDCHTFE VGHTEDVDLT KYQIIGMSRD SSERNVSRIG PIEHYKNIIS ELLLGKEGTF  840
SSGVTKQTEV VMAQYNRKEG EDSLPLFMEE IRGLSKCDME RLKHALHEVF TILSDEVDEI  900
FGCIFALSEF RSEKLPSNHG SGSYEDGIAP PSVKKQKTVT VSTIDAYEES HGHIDSDIFA  960
QLTRDIRLIE ESGKTRQEAA KMFSDGLLRK LAKMEQGVYD LLDTVASKCR SMTTPEKIEL  1020
GRRIRKLPET ALDHMVEVVK MRRPEILVSD KVSFSLGRLV LNLSVPTT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519310.0JF951931.1 Triticum aestivum clone TaMYB48 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570524.10.0PREDICTED: uncharacterized protein LOC100846611 isoform X2
TrEMBLM8BS570.0M8BS57_AEGTA; Uncharacterized protein
STRINGMLOC_56874.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.15e-77TRF-like 6